Coding

Python

• 2.7.11, 3.5.1
• NumPy, numpy-ref.pdf,numpy-user.pdf; SciPy;
• Python3-Cookbook中文版, 原版

W3School

• Version-2015, W3CN

Amber

• Amber7, Amber8, Amber9, Amber10
• Amber11,Amber12, Amber14, Amber15, Amber16,
• AmberTools12

MOE

• 2010.10-Help, SVL Function Index, SVL API Function Index

Schrodinger

• 2012: Help Documentation Index, Manuals_Index.pdf
• 2015-2: Help Documentation Index, Manuals_Index.pdf
• 2017-1: Help Documentation Index,

Gaussian

• G09W-Gaussian 09W Help Table of Contents, GaussView 5 Reference Table of Contents
• Missing Official Website for G09 User Guide

Matlab

• Official Document , 下方可选择中文.

R

• R官网, CRAN-documentation
• R导论中文版2.3.0.pdf, 统计学与R读书笔记(第六版)-2012.pdf, R参考卡片.pdf, R常见问题解答
• 3.1.1 – Manual Index; The R Reference Index.pdf (each function~), An Introduction to R.pdf

Softwares

Git related

• Pro Git (V2-zh-936): Origin , Offline, toc
• Git Help From 1.9.5.msysgit: Main; user-manual

Visualization

Chimera

• 1.10-User’s Guide, Commands Index, Tutorials, Basic Functions, Tools Index

VMD

• Official Current Version: Documentation
• 1.9.2: User’s Guide, Installation Guide, VMD quick help(commands help), VMD tutorial.pdf (examples), Old Tutorial, VMD Images and Movies Tutorial.pdf

IDE

Sublime

• Sublime 3.0 – Unofficial Documentation